supereeg 0.2
  • API
  • Gallery
  • Tutorials
  • Download
  • Site
    • Page
        • How to use the supereeg package
          • Introduction to Brain objects
          • Model objects and predicting activity
          • Nifti objects
          • Simulations

    How to use the supereeg package¶

    Introduction to Brain objects¶

    • Building a brain object
    • Load in the required libraries
    • Simulate some data
    • Creating a brain object
    • Initialize brain objects
    • The structure of a brain object
    • Brain object methods
      • bo.info()
      • bo.apply_filter()
      • bo.get_data()
      • bo.get_zscore_data()
      • bo.get_locs()
      • bo.get_slice()
      • bo.resample()
      • bo.plot_data()
      • bo.plot_locs()
      • bo.to_nii()
      • bo.save(fname='something')

    Model objects and predicting activity¶

    • Model objects and predicting whole brain activity
    • Load in the required libraries
    • Initialize model objects
    • Model object methods
      • mo.info()
      • mo.plot_data()
      • mo.plot_locs()
      • mo.update()
      • mo.get_model()
      • mo.save(fname='something')
      • Creating a new model
      • Predicting whole brain activity
      • mo.predict()
      • mo.predict(nearest_neighbor=True)
      • mo.predict(force_update=False)

    Nifti objects¶

    • Nifti objects data type
    • Load in the required libraries
    • Initialize nifti objects
      • Spatial resampling
    • Nifti object methods
      • nifti.info()
      • nifti.get_slice()
      • nifti.plot_glass_brain()
      • nifti.plot_anat()
      • nifti.make_gif()
      • nifti.save()

    Simulations¶

    • Simulate model objects and brain objects
    • Load in the required libraries
    • Simulate locations
    • Simulate brain object
      • simulate_bo()
      • Simulate model object
      • simulate_model_bos()
      • Simulation Example 1:
      • Simulation Example 2:
      • Simulation Example 3:

    Back to top

    Source

    © Copyright 2017, Contextual Dynamics Laboratory.
    Created using Sphinx 1.5.5.