.. _sphx_glr_auto_examples_plot_nifti.py:


=============================
Plot Nifti
=============================

Here, we load an example nifti image and plot it two ways.





.. rst-class:: sphx-glr-horizontal


    *

      .. image:: /auto_examples/images/sphx_glr_plot_nifti_001.png
            :scale: 47

    *

      .. image:: /auto_examples/images/sphx_glr_plot_nifti_002.png
            :scale: 47





.. code-block:: python


    # Code source: Lucy Owen & Andrew Heusser
    # License: MIT

    # import
    import supereeg as se

    # load nifti objects by passing directly to Nifti class
    # if no parameters are passed default uses gray matter masked brain downsampled to 6 mm resolution
    bo_nii = se.Nifti('example_data', vox_size=6)

    # plot first 2 timepoints as plot_glass_brain
    # default will plot first timepoint
    bo_nii.plot_glass_brain(index=[0,1])




**Total running time of the script:** ( 0 minutes  1.746 seconds)



.. only :: html

 .. container:: sphx-glr-footer


  .. container:: sphx-glr-download

     :download:`Download Python source code: plot_nifti.py <plot_nifti.py>`



  .. container:: sphx-glr-download

     :download:`Download Jupyter notebook: plot_nifti.ipynb <plot_nifti.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.readthedocs.io>`_